Flopped Tata Hexa

Publications for year 2019

07 Faculty of Science> Zurich-Basel Plant Science Center

Läubli, Nino F; Shamsudhin, Naveen; Vogler, Hannes; Munglani, Gautam; Grossniklaus, Ueli; Ahmed, Daniel; Nelson, Bradley J (2019). 3D Manipulation and Imaging of Plant Cells using Acoustically Activated Microbubbles. Small Methods, 3 (3): 1800527.

Kierzkowski, Daniel; Runions, Adam; Vuolo, Francesco; Strauss, Sören; Lymbouridou, Rena; Routier-Kierzkowska, Anne-Lise; Wilson-Sánchez, David; Jenke, Hannah; Galinha, Carla; Mosca, Gabriella; Zhang, Zhongjuan; Canales, Claudia; Dello Ioio, Raffaele; Huijser, Peter; Smith, Richard S; Tsiantis, Miltos (2019). A Growth-Based Framework for Leaf Shape Development and Diversity. Cell, 177 (6): 1405-1418.e17.

Wong, Jaslyn EMM; Nadzieja, Marcin; Madsen, Lene H; Bücherl, Christoph A; Dam, Svend; Sandal, Niels N; Couto, Daniel; Derbyshire, Paul; Uldum-Berentsen, Mette; Schroeder, Sina; Schwämmle, Veit; Nogueira, Fábio C S; Asmussen, Mette H; Thirup, Søren; Radutoiu, Simona; Blaise, Mickaël; Andersen, Kasper R; Menke, Frank L H; Zipfel, Cyril; Stougaard, Jens (2019). A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation. Proceedings of the National Academy of Sciences of the United States of America, 116 (28): 14339-14348.

Burri, Jan T; Vogler, Hannes; Munglani, Gautam; Laubli, Nino F; Grossniklaus, Ueli; Nelson, Bradley J (2019). A Microrobotic System for Simultaneous Measurement of Turgor Pressure and Cell-Wall Elasticity of Individual Growing Plant Cells. IEEE Robotics and Automation Letters, 4 (2): 641-646.

Rocha, Lamarck; Ribeiro, Patrícia Luz; Endress, Peter K; Rapini, Alessandro (2019). A brainstorm on the systematics of Turnera (Turneraceae, Malpighiales) caused by insights from molecular phylogenetics and morphological evolution. Molecular Phylogenetics and Evolution, 137: 44-63.

Pineiro Fernandez, Laura; Byers, Kelsey J R P; Cai, Jing; Sedeek, Khalid EM; Kellenberger, Roman T; Russo, Alessia; Qi, Weihong; Aquino Fournier, Catharine; Schlueter, Philipp M (2019). A phylogenomic analysis of the floral transcriptomes of sexually deceptive and rewarding European orchids, Ophrys and Gymnadenia. Frontiers in Plant Science, 10: 1553.

Calonje, Michael; Meerow, Alan W; Griffith, M Patrick; Salas-Leiva, Dayana; Vovides, Andrew P; Coiro, Mario; Francisco-Ortega, Javier (2019). A time-calibrated species tree phylogeny of the New World Cycad genus Zamia L. (Zamiaceae, Cycadales). International Journal of Plant Sciences, 180 (4): 286-314.

Yu, Dade; Wildhagen, Henning; Tylewicz, Szymon; Miskolczi, Pal C; Bhalerao, Rishikesh P; Polle, Andrea (2019). Abscisic acid signaling mediates biomass trade-off and allocation in poplar. New Phytologist, 223 (3): 1192-1203.

Frachon, Léa; Mayjonade, Baptiste; Bartoli, Claudia; Hautekèete, Nina-Coralie; Roux, Fabrice (2019). Adaptation to plant communities across the genome of Arabidopsis thaliana. Molecular Biology and Evolution, 36 (7): 1442-1456.

Kiebacher, Thomas; Meier, Markus K; Büschlen, Arnold; Schnyder, Norbert (2019). Additions to the bryoflora of Switzerland. Herzogia, 32 (1): 136-153.

Banerjee, Samiran; Walder, Florian; Büchi, Lucie; Meyer, Marcel; Hero, Alain Y; Gattinger, Andreas; Keller, Thomas; Charles, Raphael; van der Heijden, Marcel G A (2019). Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots. The ISME journal, 13 (7): 1722-1736.

Bergamini, Ariel; Büschlen, Arnold; Hepenstrick, Daniel; Kiebacher, Thomas; Meier, Markus K; Schnyder, Norbert; Urmi, Edi (2019). Contributions to bryofloristic research in Switzerland - Part 14. Meylania, (61): 5-14.

Ames-Martínez, Fressia Nathalie; Quispe Melgar, Harold Rusbelth; Zuñiga López, Dominga Gladys; Segovia Salcedo, María Claudia; Kessler, Michael (2019). Bosques de Polylepis: biodiversidad en la región central del Perú. Huancayo: Universidad Continental.

Bulzu, Paul-Adrian; Andrei, Adrian-Ştefan; Salcher, Michaela M; Mehrshad, Maliheh; Inoue, Keiichi; Kandori, Hideki; Beja, Oded; Ghai, Rohit; Banciu, Horia L (2019). Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche. Nature Microbiology, 4 (7): 1129-1137.

Kartal, Önder; Schmid, Marc W; Grossniklaus, Ueli (2019). Cell Type-specific Genome Scans of DNA Methylation Diversity Indicate an Important Role for Transposable Elements. bioRxiv 801233, University of Zurich.

Bergelson, Joy; Mittelstrass, Jana; Horton, Matthew W (2019). Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome. Scientific Reports, 9:24.

Hörtensteiner, Stefan; Hauenstein, Mareike; Kräutler, Bernhard (2019). Chlorophyll breakdown — Regulation, biochemistry and phyllobilins as its products. In: Grimm, Bernhard. Metabolism, Structure and Function of Plant Tetrapyrroles: Introduction, Microbial and Eukaryotic Chlorophyll Synthesis and Catabolism. London: Elsevier, 213-271.

Loaiza Puerta, Viviana; Six, Johan; Wittwer, Raphael; van der Heijden, Marcel; Pujol Pereira, Engil Isadora (2019). Comparable bacterial-mediated nitrogen supply and losses under organic reduced tillage and conventional intensive tillage. Soil Biology and Biochemistry, 95: 103121.

Wan, Wei-Lin; Zhang, Lisha; Pruitt, Rory; Zaidem, Maricris; Brugman, Rik; Ma, Xiyu; Krol, Elzbieta; Perraki, Artemis; Kilian, Joachim; Grossmann, Guido; Steel, mark; Shan, Libo; Zipfel, Cyril; van Kan, Jan A L; Hedrich, Rainer; Weigel, Detlef; Gust, Andrea A; Nürnberger, Thorsten (2019). Comparing Arabidopsis receptor kinase and receptor protein-mediated immune signaling reveals BIK1-dependent differences. New Phytologist, 221 (4): 2080-2095.

Seitz, Steffen; Goebes, Philipp; Puerta, Viviana Loaiza; Pereira, Engil Isadora Pujol; Wittwer, Raphaël; Six, Johan; van der Heijden, Marcel G A; Scholten, Thomas (2019). Conservation tillage and organic farming reduce soil erosion. Agronomy for Sustainable Development, 39 (1): 4.

Wyder, Stefan; Raissig, Michael T; Grossniklaus, Ueli (2019). Consistent Reanalysis of Genome-wide Imprinting Studies in Plants Using Generalized Linear Models Increases Concordance across Datasets. Scientific Reports, 9 (1): 1320- ..

Galindo-Trigo, Sergio; Blanco-Touriñán, Noel; DeFalco, Thomas A; Wells, Eloise S; Gray, Julie E; Zipfel, Cyril; Smith, Lisa M (2019). Cr RLK 1L receptor ‐ like kinases HERK 1 and ANJEA are female determinants of pollen tube reception. EMBO Reports: e48466.

Herzog, Chantal; Honegger, Adrian; Hegglin, Django; Wittwer, Raphaël; de Ferron, Anne; Verbruggen, Erik; Jeanneret, Philippe; Schloter, Michael; Banerjee, Samiran; van der Heijden, Marcel G A (2019). Crop yield, weed cover and ecosystem multifunctionality are not affected by the duration of organic management. Agriculture, Ecosystems & Environment, 284: 106596.

Flowers, Jonathan M; Hazzouri, Khaled M; Gros-Balthazard, Muriel; Mo, Ziyi; Koutroumpa, Konstantina; Perrakis, Andreas; Ferrand, Sylvie; Khierallah, Hussam S M; Fuller, Dorian Q; Aberlenc, Frederique; Fournaraki, Christini; Purugganan, Michael D (2019). Cross-species hybridization and the origin of North African date palms. Proceedings of the National Academy of Sciences of the United States of America, 116 (5): 1651-1658.

Süssenbacher, Iris; Menghini, Damian; Scherzer, Gerhard; Salinger, Kathrin; Erhart, Theresia; Moser, Simone; Vergeiner, Clemens; Hörtensteiner, Stefan; Kräutler, Bernhard (2019). Cryptic chlorophyll breakdown in non-senescent green Arabidopsis thaliana leaves. Photosynthesis Research, 142 (1): 69-85.

Hofmann, Heike; Kahle, Doris (2019). The Bryotheca Helvetica by Dr. J.Jules Amann (1859-1939) goes online. Meylania, 64: 40-44.

Wüest, Rafael O; Boucher, Florian C; Bouchenak-Khelladi, Yanis; Karger, Dirk N; Linder, H Peter (2019). Dissecting biodiversity in a global hotspot: Uneven dynamics of immigration and diversification within the Cape Floristic Region of South Africa. Journal of Biogeography, 46 (9): 1936-1947.

Scopece, G; Frachon, Léa; Cozzolino, Salvatore (2019). Do native and invasive herbivores have an effect on Brassica rapa pollination? Plant Biology, 21 (5): 927-934.

Sendek, Agnieszka; Karakoç, Canan; Wagg, Cameron; Domínguez-Begines, Jara; do Couto, Gabriela Martucci; van der Heijden, Marcel G A; Naz, Ali Ahmad; Lochner, Alfred; Chatzinotas, Antonis; Klotz, Stefan; Gomez-Aparicio, Lorena; Eisenhauer, Nico (2019). Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity. Scientific Reports, 9 (1): 9650.

Sailer, Christian; Stöcklin, Jürg; Grossniklaus, Ueli (2019). Dynamics of apomictic and sexual reproduction during primary succession on a glacier forefield in the Swiss Alps. bioRxiv 807651, University of Zurich.

Ehmig, Merten; Coiro, Mario; Linder, H Peter (2019). Ecophysiological strategy switch through development in heteroblastic species of mediterranean ecosystems - an example in the African Restionaceae. Annals of Botany, 123 (4): 611-623.

Kellenberger, Roman T; Byers, Kelsey J R P; De Brito Francisco, Rita M; Staedler, Yannick M; LaFountain, Amy M; Schönenberger, Juerg; Schiestl, Florian P; Schlueter, Philipp M (2019). Emergence of a floral color polymorphism by pollinator-mediated overdominance. Nature Communications, 10:63.

Florez-Rueda, Ana Marcela; Fiscalini, Flurin; Roth, Morgane; Grossniklaus, Ueli; Städler, Thomas (2019). Endosperm and seed transcriptomes reveal possible roles for small RNA pathways in wild tomato hybrid seed failure. bioRxiv 884387, University of Zurich.

Bender, S Franz; Schlaeppi, Klaus; Hero, Alain; Van der Heijden, Marcel G A (2019). Establishment success and crop growth effects of an arbuscular mycorrhizal fungus inoculated into Swiss corn fields. Agriculture, Ecosystems & Environment, 273: 13-24.

Rutishauser, Rolf (2019). Ever since Darwin: why plants are important for evo-devo research. In: Fusco, Giuseppe. Perspectives on evolutionary and developmental biology: essays for Alessandro Minelli. Padova: Padova University Press, 41-55.

Drinnenberg, Ines A; Berger, Frédéric; Elsasser, Simon J; Andersen, Peter R; Ausió, Juan; Bickmore, Wendy A; Blackwell, Alexander R; Erwin, Douglas H; Gahan, James M; Gaut, Brandon S; Harvey, Zachary H; Henikoff, Steven; Kao, Joyce Y; Kurdistani, Siavash K; Lemos, Bernardo; Levine, Mia T; Luger, Karolin; Malik, Harmit S; Martín-Durán, José M; Peichel, Catherine L; Renfree, Marilyn B; Rutowicz, Kinga; Sarkies, Peter; Schmitz, Robert J; Technau, Ulrich; Thornton, Joseph W; Warnecke, Tobias; Wolfe, Kenneth H (2019). EvoChromo: towards a synthesis of chromatin biology and evolution. Development, 146 (19): dev178962.

Salcher, Michaela M; Schaefle, Daniel; Kaspar, Melissa; Neuenschwander, Stefan M; Ghai, Rohit (2019). Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae. The ISME journal, 13 (11): 2764-2777.

Szövényi, Peter; Waller, Manuel; Kirbis, Alexander (2019). Evolution of the plant body plan. In: Grossniklaus, Ueli. Plant development and evolution. Cambridge: Elsevier, 1-34.

Pfeilmeier, Sebastian; George, Jeoffrey; Morel, Arry; Roy, Sonali; Smoker, Matthew; Stransfeld, Lena; Downie, J Allan; Peeters, Nemo; Malone, Jacob G; Zipfel, Cyril (2019). Expression of the Arabidopsis thaliana immune receptor EFR in Medicago truncatula reduces infection by a root pathogenic bacterium, but not nitrogen ‐ fixing rhizobial symbiosis. Plant Biotechnology Journal, 17 (3): 569-579.

Marazzi, Brigitte; Gonzalez, Ana Maria; Delgado-Salinas, Alfonso; Luckow, Melissa A; Ringelberg, Jens J; Hughes, Colin E (2019). Extrafloral nectaries in Leguminosae: phylogenetic distribution, morphological diversity and evolution. Australian Systematic Botany, 32: 409-458.

Erdei, Boglárka; Coiro, Mario; Miller, Ian; Johnson, Kirk R; Griffith, M Patrick; Murphy, Vickie (2019). First cycad seedling foliage from the fossil record and inferences for the Cenozoic evolution of cycads. Biology Letters, 15 (7): online.

Camel, Vladimir; Quispe-Melgar, Harold Rusbelth; Ames-Martínez, Fressia Nathalie; Navarro Romo, Wendy Carolay; Segovia-Salcedo, María C; Kessler, Michael (2019). Forest structure of three endemic species of the genus Polylepis (Rosaceae) in central Perú. Ecologia Austral (Online Edition), 29: 285-295.

Wagg, Cameron; Schlaeppi, Klaus; Banerjee, Samiran; Kuramae, Eiko E; van der Heijden, Marcel G A (2019). Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning. Nature Communications, 10: 4841.

Gagnon, Edeline; Ringelberg, Jens J; Bruneau, Anne; Lewis, Gwilym P; Hughes, Colin E (2019). Global succulent biome phylogenetic conservatism across the pantropical Caesalpinia group (Leguminosae). New Phytologist, 222 (4): 1994-2008.

Kuon, Joel-E; Qi, Weihong; Schläpfer, Pascal; Hirsch-Hoffmann, Matthias; von Bieberstein, Philipp Rogalla; Patrignani, Andrea; Poveda, Lucy; Grob, Stefan; Keller, Miyako; Shimizu-Inatsugi, Rie; Grossniklaus, Ueli; Vanderschuren, Hervé; Gruissem, Wilhelm (2019). Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars. BMC Biology, 17 (1): 75.

Coiro, Mario; Doyle, James A; Hilton, Jason (2019). How deep is the conflict between molecular and fossil evidence on the age of angiosperms? New Phytologist, 223 (1): 83-99.

Blockeel, Tom L; Kiebacher, Thomas; Long, David G (2019). Hygrohypnum subeugyrium (Renauld & Cardot) Broth. (Hypnales), a neglected British moss, with a note on its occurrence in the Himalayas. Journal of Bryology, 41 (1): 12-20.

Wuest, Samuel E; Pires, Nuno D; Luo, Shan; Vasseur, Francois; Messier, Julie; Grossniklaus, Ueli; Niklaus, Pascal A (2019). Increasing plant group productivity through latent genetic variation for cooperation. BioRxiv 641449, University of Zurich.

Reimer, Marie; Ringselle, Björn; Bergkvist, Göran; Westaway, Sally; Wittwer, Raphaël; Baresel, Jörg Peter; van der Heijden, Marcel G A; Mangerud, Kjell; Finckh, Maria R; Brandsæter, Lars Olav (2019). Interactive Effects of Subsidiary Crops and Weed Pressure in the Transition Period to Non-Inversion Tillage, A Case Study of Six Sites Across Northern and Central Europe. Agronomy, 9 (9): 495.

Grob, Stefan; Grossniklaus, Ueli (2019). Invasive DNA elements modify the nuclear architecture of their insertion site by KNOT-linked silencing in Arabidopsis thaliana. Genome Biology, 20 (1): 120.

Urmi, Edi (2019). Inventaire préliminaire des hépatiques et mousses du Bois de Chênes. In: Podolak, Marion. Biodiversité du Bois de Chênes: journeés de la biodiversité 2015 (Coinsins, Genolier, Vich; VD). Lausanne: Société Vaudoise des Sciences Naturelles, 67-70.

Nürk, Nicolai M; Atchison, Guy W; Hughes, Colin E (2019). Island woodiness underpins accelerated disparification in plant radiations. New Phytologist, 224 (1): 518-531.

Phyo, Kay Khine; Kluge, Jürgen; Kessler, Michael; Miehe, Georg; Karger, Dirk Nikolaus (2019). Latitude-independent, continent-wide consistency in climate - richness relationships in Asian ferns and lycophytes. Journal of Biogeography, 46 (5): 981-991.

Koenen, Erik J M. Legume phylogenomics and the limits to phylogenetic resolution. 2019, University of Zurich, Faculty of Science.

Rutowicz, Kinga; Lirski, Maciej; Mermaz, Benoît; Teano, Gianluca; Schubert, Jasmin; Mestiri, Imen; Kroteń, Magdalena A; Fabrice, Tohnyui Ndinyanka; Fritz, Simon; Grob, Stefan; Ringli, Christoph; Cherkezyan, Lusik; Barneche, Fredy; Jerzmanowski, Andrzej; Baroux, Célia (2019). Left histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis. Genome Biology, 20: 157.

Miskolczi, Pál; Singh, Rajesh Kumar; Tylewicz, Szymon; Azeez, Abdul; Maurya, Jay P; Tarkowská, Danuše; Novák, Ondřej; Jonsson, Kristoffer; Bhalerao, Rishikesh P (2019). Long-range mobile signals mediate seasonal control of shoot growth. Proceedings of the National Academy of Sciences of the United States of America, 116 (22): 10852-10857.

Xiao, Yu; Stegmann, Martin; Han, Zhifu; DeFalco, Thomas A; Parys, Katarzyna; Xu, Li; Belkhadir, Youssef; Zipfel, Cyril; Chai, Jijie (2019). Mechanisms of RALF peptide perception by a heterotypic receptor complex. Nature, 572 (7768): 270-274.

Šimek, Karel; Grujčić, Vesna; Nedoma, Jiří; Jezberová, Jitka; Šorf, Michal; Matoušů, Anna; Pechar, Libor; Posch, Thomas; Bruni, Estelle P; Vrba, Jaroslav (2019). Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography, 64 (5): 2295-2309.

Tsutsui, Hiroki; Yanagisawa, Naoki; Kawakatsu, Yaichi; Ikematsu, Shuka; Sawai, Yu; Tabata, Ryo; Arata, Hideyuki; Higashiyama, Tetsuya; Notaguchi, Michitaka (2019). Micrografting device for testing environmental conditions for grafting and systemic signaling in Arabidopsis. bioRxiv 885525, University of Zurich.

Tsutsui, Hiroki; Sato, Yoshikatsu; Susaki, Daichi; Higashiyama, Tetsuya (2019). Microtubule depletion domain 1 localizes at the boundary between female gametes in Arabidopsis thaliana. Molecular Reproduction and Development, 86 (8): 925.

Fernández, Iván; Cosme, Marco; Stringlis, Ioannis A; Yu, Ke; de Jonge, Ronnie; van Wees, Saskia CM; Pozo, Maria J; Pieterse, Corné M J; van der Heijden, Marcel G A (2019). Molecular dialogue between arbuscular mycorrhizal fungi and the nonhost plant Arabidopsis thaliana switches from initial detection to antagonism. New Phytologist, 223 (2): 867-881.

Kiebacher, Thomas; Lüth, Michael; Lüth, Volker; Kučera, Jan (2019). Morphological and Molecular Evidence for Synonymy of Cinclidotus confertus Lüth with C. riparius (Host ex Brid.) Arn. Cryptogamy Bryology, 40 (20): 259-269.

Karasev, Eugeny; Forte, Giuseppa; Coiro, Mario; Kustatscher, Evelyn (2019). Mutoviaspermum krassilovii gen. Et sp. nov .: A peculiar compound ovuliferous Conifer cone from the Lopingian (late Permian) of European Russia (Vologda region). International Journal of Plant Sciences, 180 (8): 779-799.

Kiss, Patrick (2019). The country needs new species connoisseurs: Successful field botany courses and certification in Switzerland. In: BBN. A clear course - nature conservation. Bonn: Federal Association for Professional Nautrschutz BBN, 272-278.

Pöltl, Martina; Erzberger, Peter; Gey, Stefan; Kiebacher, Thomas; Koeckinger, Heribert; Reimann, Markus; Schramm, Jens; Sündhofer, Rita; Berger, Christian (2019). News about the moss flora of Styria 2. Joannea Botany, 16: 65-80.

Alegro, Antun; Šegota, Vedran; Rimac, Anja; Kiebacher, Thomas; Prlić, Dragan; Sedlar, Zorana; Vuković, Nina; Papp, Beata (2019). New and noteworthy Bryophyte records from Croatia. Cryptogamy Bryology, 40 (2): 3-11.

Colombi, Tino; Walder, Florian; Büchi, Lucie; Sommer, Marlies; Liu, Kexing; Six, Johan; van der Heijden, Marcel G A; Charles, Raphaël; Keller, Thomas (2019). On-farm study reveals positive relationship between gas transport capacity and organic carbon content in arable soil. SOIL, 5 (1): 91-105.

Leebens-Mack, James H; Barker, Michael S; Carpenter, Erik J; Deyholos, Michael K; Gitzendanner, Matthew A; Graham, Sean W; Grosse, Ivo; Li, Zheng; Melkonian, Michael; Mirarab, Siavash; Porsch, Martin; Quint, Marcel; Rensing, Stefan A; Soltis, Douglas E; Soltis, Pamela S; Stevenson, Dennis W; Ullrich, Kristian K; Wickett, Norman J; DeGironimo, Lisa; Szövényi, Péter (2019). One thousand plant transcriptomes and the phylogenomics of green plants. Nature, 574 (7780): 679-685.

Grímsson, Friðgeir; Graham, Shirley A; Coiro, Mario; Jacobs, Bonnie F; Xafis, Alexandros; Neumann, Frank H; Scott, Louis; Sakala, Jakub; Currano, Ellen D; Zetter, Reinhard (2019). Origin and divergence of Afro-Indian Picrodendraceae: linking pollen morphology, dispersal modes, fossil records, molecular dating and paleogeography. Grana, 58 (4): 227-275.

Morais, Erica B.